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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 810.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1312.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 762
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 846.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 1142.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 422.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 716.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1533.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 652.7
Min RPKM: 14.1
Std RPKM: 135.4
Median RPKM: 165.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
652.7
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
612.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
596.3
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
497.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
474.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
473.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
458.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
449.6
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
441.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
440.3
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
394.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
379.1
GTEX-R53T-0326-SM-48FEC
50-59 years, female
376.0
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
367.8
GTEX-QEL4-1226-SM-447A4
50-59 years, male
363.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
354.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
350.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
328.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
327.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
325.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
318.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
317.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
317.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
309.3
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
304.5
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
304.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
302.5
GTEX-13113-1326-SM-5GCOI
60-69 years, female
301.4
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
290.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
290.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
267.7
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
251.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
251.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
248.9
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
248.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
246.4
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
243.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
243.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
242.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
240.0
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
238.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
237.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
236.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
236.6
GTEX-REY6-1226-SM-48FDR
60-69 years, male
234.3
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
231.8
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
229.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
206.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
205.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
202.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
199.9
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
193.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
192.5
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
192.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
188.6
GTEX-RU72-1426-SM-46MUF
50-59 years, female
182.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
178.0
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
168.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
166.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
165.8
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
164.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
160.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
159.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
158.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
158.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
154.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
153.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
151.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
150.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
148.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
142.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
140.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
138.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
137.9
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
135.3
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
134.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
126.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
120.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
118.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
115.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
115.5
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
112.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
112.0
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
110.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
101.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
101.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
100.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
99.9
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
96.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
95.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
94.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
85.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
85.0
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
80.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
78.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
77.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
71.7
GTEX-11GSP-0626-SM-5986T
60-69 years, female
66.5
GTEX-QESD-2026-SM-447BI
20-29 years, male
64.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
64.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
63.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
59.2
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
57.4
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
56.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
54.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
54.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
51.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
49.8
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
49.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
47.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
47.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
46.6
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
45.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
44.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
37.9
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
36.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
35.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
16.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
14.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.