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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 137
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 102
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 69.8
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 174.6
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 184.6
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 118.1
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 200.5
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 160.3
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 207.7
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 111.8
Min RPKM: 19.1
Std RPKM: 18.7
Median RPKM: 59.9
GTEX-11WQC-2326-SM-5EQKE
60-69 years, male
111.8
GTEX-ZYT6-2726-SM-5GICP
30-39 years, male
100.3
GTEX-117YW-1526-SM-5EGGP
50-59 years, male
100.0
GTEX-Z93S-1726-SM-5HL8G
50-59 years, male
96.3
GTEX-WK11-0326-SM-4OOS6
50-59 years, male
96.0
GTEX-T6MN-2026-SM-4DM7L
50-59 years, male
92.8
GTEX-139TS-1726-SM-5IJG5
60-69 years, male
91.5
GTEX-TKQ2-1526-SM-4DXUN
50-59 years, male
90.3
GTEX-11ZUS-2726-SM-5FQUA
30-39 years, male
88.6
GTEX-13OVL-0426-SM-5IFG6
50-59 years, male
88.4
GTEX-13VXU-0726-SM-5J2O7
50-59 years, male
87.1
GTEX-S7PM-0626-SM-4AD4Q
60-69 years, male
86.5
GTEX-12WSL-2326-SM-5DUXQ
50-59 years, male
86.4
GTEX-ZTSS-1526-SM-51MTC
40-49 years, male
86.4
GTEX-ZVTK-0126-SM-57WDG
20-29 years, male
86.0
GTEX-12WSH-0326-SM-5GCNH
50-59 years, male
85.4
GTEX-11GS4-2026-SM-5N9CP
60-69 years, male
85.0
GTEX-QEG4-0126-SM-48TZE
30-39 years, male
84.9
GTEX-XAJ8-1326-SM-47JYT
40-49 years, male
83.4
GTEX-14ABY-0626-SM-5Q5C9
50-59 years, male
83.3
GTEX-Y111-2426-SM-4TT23
50-59 years, male
83.3
GTEX-Q2AI-1226-SM-48U14
40-49 years, male
82.5
GTEX-117XS-2026-SM-5GID1
60-69 years, male
82.4
GTEX-11EQ9-1926-SM-5PNVV
30-39 years, male
81.7
GTEX-13112-0226-SM-5P9IV
50-59 years, male
81.7
GTEX-SNOS-1126-SM-4DM67
40-49 years, male
81.3
GTEX-139TT-2226-SM-5LZWO
60-69 years, male
81.0
GTEX-145MO-0126-SM-5S2QU
60-69 years, male
80.9
GTEX-13N1W-2626-SM-5IJEP
70-79 years, male
80.2
GTEX-S4Q7-1226-SM-4AD5I
20-29 years, male
80.2
GTEX-OXRL-2126-SM-3NM98
50-59 years, male
79.6
GTEX-11DXZ-2126-SM-59881
50-59 years, male
78.8
GTEX-N7MS-0126-SM-3TW8O
60-69 years, male
77.8
GTEX-REY6-0126-SM-48FDT
60-69 years, male
77.4
GTEX-OOBK-2126-SM-3LK5T
40-49 years, male
77.2
GTEX-OHPM-2126-SM-3LK75
50-59 years, male
77.0
GTEX-144GM-0426-SM-5Q5C8
20-29 years, male
76.0
GTEX-12ZZY-0126-SM-5LZV2
60-69 years, male
75.9
GTEX-111VG-1926-SM-5GIDO
60-69 years, male
75.8
GTEX-QEG5-0126-SM-4R1JR
20-29 years, male
75.8
GTEX-11OF3-1826-SM-5987N
60-69 years, male
75.1
GTEX-ZAB5-2426-SM-5CVMW
50-59 years, male
75.1
GTEX-11NV4-1726-SM-5N9FC
60-69 years, male
74.4
GTEX-13FHP-2826-SM-5IJFW
50-59 years, male
74.2
GTEX-OIZH-2126-SM-3NB1P
50-59 years, male
73.6
GTEX-U8T8-1126-SM-4DXUE
60-69 years, male
70.8
GTEX-V1D1-2126-SM-4JBH4
50-59 years, male
70.0
GTEX-X5EB-2026-SM-4E3KA
40-49 years, male
70.0
GTEX-YEC3-1726-SM-5IFIK
50-59 years, male
69.4
GTEX-ZQUD-2026-SM-51MSM
30-39 years, male
69.1
GTEX-ZVZP-2226-SM-57WBF
50-59 years, male
69.1
GTEX-1212Z-0326-SM-5FQSJ
60-69 years, male
68.3
GTEX-12WSI-2126-SM-5GCMV
50-59 years, male
68.3
GTEX-11EQ8-1426-SM-5EGJR
60-69 years, male
67.6
GTEX-XBEC-0126-SM-4GIDT
50-59 years, male
67.6
GTEX-11EI6-2226-SM-5EGJM
60-69 years, male
66.9
GTEX-13FLW-2126-SM-5N9FD
50-59 years, male
66.9
GTEX-ZT9W-2226-SM-57WFU
50-59 years, male
66.7
GTEX-13NZB-2026-SM-5MR4M
30-39 years, male
66.3
GTEX-144GL-0726-SM-5LU4P
50-59 years, male
66.3
GTEX-U4B1-1526-SM-4DXSL
40-49 years, male
66.3
GTEX-UPJH-0126-SM-4IHLL
50-59 years, male
66.1
GTEX-12C56-1426-SM-5FQSW
20-29 years, male
65.8
GTEX-131XE-0426-SM-5IJF4
50-59 years, male
65.6
GTEX-12696-0226-SM-5EGL3
60-69 years, male
65.3
GTEX-11NUK-2626-SM-5A5MB
50-59 years, male
65.2
GTEX-11O72-0726-SM-5P9GO
40-49 years, male
65.2
GTEX-ZPU1-2126-SM-57WED
40-49 years, male
65.2
GTEX-13OW5-2526-SM-5L3I1
60-69 years, male
65.0
GTEX-QV31-1126-SM-4R1K4
30-39 years, male
64.9
GTEX-ZV7C-2026-SM-5NQ8F
50-59 years, male
64.5
GTEX-132QS-1226-SM-5P9GD
60-69 years, male
64.4
GTEX-X3Y1-2626-SM-4PQZI
40-49 years, male
63.3
GTEX-ZZ64-1126-SM-5GZXY
20-29 years, male
63.1
GTEX-R55E-0726-SM-48FCZ
20-29 years, male
63.0
GTEX-S3XE-1526-SM-4AD5A
50-59 years, male
62.9
GTEX-S7SE-0326-SM-4AT5Q
50-59 years, male
62.3
GTEX-111YS-2026-SM-5EGGL
60-69 years, male
62.2
GTEX-V955-1926-SM-4KL1L
60-69 years, male
61.7
GTEX-WH7G-1926-SM-4LVMM
40-49 years, male
61.7
GTEX-Q2AH-1526-SM-48TZG
40-49 years, male
60.9
GTEX-U8XE-0126-SM-4E3I3
30-39 years, male
60.6
GTEX-WZTO-0326-SM-4PQYZ
40-49 years, male
60.4
GTEX-11P82-1526-SM-5BC5M
20-29 years, male
60.2
GTEX-PW2O-1426-SM-48TCD
20-29 years, male
60.2
GTEX-XQ3S-2726-SM-4BOP2
20-29 years, male
60.2
GTEX-13NZA-2526-SM-5IJFX
60-69 years, male
59.7
GTEX-TKQ1-0926-SM-4DXU2
30-39 years, male
59.0
GTEX-WHSB-2126-SM-4M1XF
50-59 years, male
59.0
GTEX-111FC-1926-SM-5GZYC
60-69 years, male
58.4
GTEX-T8EM-0126-SM-4DM5R
40-49 years, male
58.2
GTEX-13111-1526-SM-5EGJX
50-59 years, male
57.6
GTEX-WFG8-1926-SM-4LVM1
20-29 years, male
57.6
GTEX-XGQ4-2026-SM-4AT6G
50-59 years, male
57.5
GTEX-XLM4-1526-SM-4AT6D
60-69 years, male
57.3
GTEX-RUSQ-2126-SM-47JXK
50-59 years, male
57.0
GTEX-ZUA1-2726-SM-59HLJ
40-49 years, male
56.5
GTEX-ZYFC-0126-SM-5GIEH
50-59 years, male
56.4
GTEX-R55D-0126-SM-48FEL
50-59 years, male
56.2
GTEX-ZDYS-1326-SM-5IJFF
50-59 years, male
55.9
GTEX-Y5V6-1726-SM-4VDSZ
60-69 years, male
55.4
GTEX-111CU-1726-SM-5EGHM
50-59 years, male
54.9
GTEX-S95S-1126-SM-4B64E
60-69 years, male
54.8
GTEX-WVLH-2626-SM-4MVNV
50-59 years, male
54.6
GTEX-R55C-1426-SM-48FED
40-49 years, male
53.9
GTEX-YF7O-2026-SM-4W1YE
50-59 years, male
53.7
GTEX-YFCO-1726-SM-4W21S
40-49 years, male
53.0
GTEX-RWSA-2426-SM-47JXR
40-49 years, male
52.6
GTEX-139T6-1226-SM-5IFFC
50-59 years, male
52.2
GTEX-XBED-2026-SM-4AT5D
60-69 years, male
52.2
GTEX-11NSD-1026-SM-5N9BE
20-29 years, male
51.8
GTEX-14753-0626-SM-5Q5CY
60-69 years, male
51.3
GTEX-SNMC-1026-SM-4DM7K
20-29 years, male
51.0
GTEX-1399Q-2826-SM-5IJEZ
40-49 years, male
50.7
GTEX-XMK1-2026-SM-4B65K
40-49 years, male
50.6
GTEX-147JS-0126-SM-5S2TW
60-69 years, male
50.5
GTEX-ZA64-1626-SM-5CVME
20-29 years, male
50.5
GTEX-145MH-2326-SM-5O9AW
50-59 years, male
50.0
GTEX-ZT9X-1426-SM-5DUX1
40-49 years, male
49.7
GTEX-13NYB-2226-SM-5MR58
40-49 years, male
49.3
GTEX-13O61-2026-SM-5J2M6
60-69 years, male
49.2
GTEX-11LCK-2326-SM-5HL53
30-39 years, male
49.1
GTEX-144GN-1626-SM-5Q5BU
50-59 years, male
49.1
GTEX-U3ZM-1626-SM-4DXSK
40-49 years, male
48.8
GTEX-P4QS-2126-SM-3NMCF
60-69 years, male
48.3
GTEX-QMRM-1526-SM-4R1K6
50-59 years, male
47.6
GTEX-13N2G-0126-SM-5N9DV
60-69 years, male
47.3
GTEX-11TUW-2226-SM-5EQL9
60-69 years, male
46.9
GTEX-OOBJ-2126-SM-3NB1N
60-69 years, male
46.6
GTEX-T5JC-0726-SM-4DM55
20-29 years, male
46.3
GTEX-13FTW-1326-SM-5LZZD
40-49 years, male
46.2
GTEX-WOFM-1126-SM-4OOSB
20-29 years, male
45.7
GTEX-145LT-0426-SM-5LUAP
40-49 years, male
45.5
GTEX-X261-2326-SM-4PQYU
50-59 years, male
45.0
GTEX-11WQK-2826-SM-5EQKH
50-59 years, male
44.8
GTEX-12WSM-1326-SM-5GCP9
60-69 years, male
44.8
GTEX-QV44-1726-SM-4R1KG
50-59 years, male
44.8
GTEX-YB5E-1926-SM-5IFIG
40-49 years, male
44.8
GTEX-1339X-1926-SM-5PNVP
40-49 years, male
44.2
GTEX-13O1R-0726-SM-5IJEI
60-69 years, male
43.9
GTEX-RM2N-1326-SM-48FCW
50-59 years, male
43.9
GTEX-QLQW-1026-SM-447A9
30-39 years, male
43.7
GTEX-1399R-1626-SM-5P9GG
30-39 years, male
43.1
GTEX-WFON-2026-SM-4LVMW
40-49 years, male
43.0
GTEX-QLQ7-1426-SM-4R1JX
60-69 years, male
42.5
GTEX-SUCS-1326-SM-4DM5T
70-79 years, male
41.8
GTEX-YEC4-1526-SM-4W1YU
40-49 years, male
41.5
GTEX-13O21-1226-SM-5J2MK
50-59 years, male
41.4
GTEX-11P7K-1026-SM-5HL6Y
30-39 years, male
40.5
GTEX-P4QR-0226-SM-3NMCH
60-69 years, male
39.4
GTEX-YJ89-0626-SM-4TT3Z
60-69 years, male
39.2
GTEX-VJYA-1426-SM-4KL1Y
60-69 years, male
37.8
GTEX-11TT1-2226-SM-5GU6B
20-29 years, male
37.1
GTEX-ZTX8-1126-SM-51MRM
20-29 years, male
36.7
GTEX-13OVH-0726-SM-5N9BU
70-79 years, male
35.2
GTEX-PLZ5-1526-SM-3P5ZX
50-59 years, male
34.5
GTEX-S33H-0126-SM-4AD62
30-39 years, male
33.7
GTEX-XPT6-1626-SM-4B655
20-29 years, male
32.6
GTEX-NFK9-0126-SM-3LK5H
40-49 years, male
32.4
GTEX-13OW6-0126-SM-5IJGM
50-59 years, male
32.0
GTEX-O5YT-2126-SM-3MJGD
20-29 years, male
29.5
GTEX-OIZI-0126-SM-3NB13
40-49 years, male
29.1
GTEX-XPVG-2226-SM-4B65U
50-59 years, male
28.1
GTEX-Y9LG-1726-SM-4VBQE
30-39 years, male
25.1
GTEX-14A6H-2326-SM-5Q5B5
30-39 years, male
23.8
GTEX-RN64-2326-SM-48FDW
50-59 years, male
23.8
GTEX-147F4-0626-SM-5LUAK
50-59 years, male
23.5
GTEX-U3ZH-1526-SM-4DXV1
30-39 years, male
23.5
GTEX-11ONC-2226-SM-5HL6D
60-69 years, male
20.6
GTEX-ZAB4-0126-SM-5CVMG
40-49 years, male
20.2
GTEX-ZDTT-2026-SM-5K7TY
60-69 years, male
19.3
GTEX-Y8E4-2226-SM-5LU94
40-49 years, male
19.1
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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