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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 592
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 810.3
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 474
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 689.8
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 672
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 724.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 736.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1038.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 624.9
Min RPKM: 20.9
Std RPKM: 114.3
Median RPKM: 197.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
624.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
615.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
498.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
474.4
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
473.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
462.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
457.4
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
445.6
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
413.7
GTEX-Q734-0326-SM-48U15
40-49 years, female
402.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
399.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
380.2
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
361.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
344.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
337.5
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
330.1
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
329.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
325.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
325.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
315.5
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
308.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
305.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
296.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
289.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
288.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
275.9
GTEX-S32W-1926-SM-4AD63
50-59 years, female
273.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
262.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
262.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
259.7
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
259.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
259.0
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
257.6
GTEX-1399T-0826-SM-5IFES
60-69 years, male
251.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
247.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
247.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
244.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
237.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
234.4
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
234.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
233.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
231.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
226.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
226.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
226.1
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
221.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
218.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
217.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
214.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
213.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
211.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
209.5
GTEX-RN64-1826-SM-48FDV
50-59 years, male
208.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
208.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
207.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
204.4
GTEX-13112-1426-SM-5EGH8
50-59 years, male
203.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
198.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
198.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
197.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
195.8
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
195.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
194.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
193.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
191.3
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
189.6
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
188.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
182.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
174.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
172.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
172.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
171.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
171.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
170.1
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
169.7
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
168.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
166.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
166.1
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
164.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
162.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
160.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
158.9
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
153.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
149.8
GTEX-RU72-1426-SM-46MUF
50-59 years, female
147.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
142.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
142.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
137.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
137.6
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
135.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
134.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
132.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
129.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
129.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
126.3
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
122.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
121.1
GTEX-11ZUS-2526-SM-59872
30-39 years, male
112.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
112.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
112.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
110.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
110.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
106.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
91.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
90.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
89.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
88.7
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
88.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
87.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
82.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
77.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
69.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
68.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
66.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
65.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
62.2
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
59.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
46.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
20.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.