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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 501.4
Min RPKM: 27.4
Std RPKM: 107.8
Median RPKM: 164.6
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
501.4
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
473.6
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
459.5
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
443.3
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
403.4
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
389.4
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
372.3
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
366.8
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
361.9
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
351.5
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
349.6
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
344.1
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
341.5
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
329.1
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
325.7
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
315.5
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
301.4
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
285.9
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
283.4
GTEX-QCQG-1226-SM-48U23
50-59 years, female
272.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
269.4
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
266.4
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
265.3
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
254.8
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
249.5
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
247.7
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
245.6
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
232.9
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
230.0
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
226.1
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
223.6
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
221.3
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
220.8
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
214.2
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
213.5
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
203.4
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
199.3
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
199.3
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
195.0
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
194.6
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
193.7
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
193.6
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
189.4
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
187.9
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
186.4
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
173.5
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
168.9
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
165.7
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
163.5
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
160.1
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
160.1
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
160.0
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
157.2
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
153.2
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
149.7
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
147.0
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
146.6
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
145.7
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
144.4
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
142.3
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
141.2
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
138.7
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
138.2
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
135.7
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
134.3
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
133.3
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
122.9
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
121.0
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
118.8
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
115.4
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
111.2
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
110.4
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
109.5
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
107.1
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
107.0
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
105.0
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
103.0
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
102.9
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
99.1
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
97.9
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
96.7
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
92.1
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
90.7
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
87.9
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
83.0
GTEX-11I78-2026-SM-5987C
50-59 years, female
62.5
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
62.1
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
61.0
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
58.0
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
57.3
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
55.9
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
49.2
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
49.0
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
44.7
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
29.3
GTEX-S341-1226-SM-4AD5S
40-49 years, female
27.4
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.