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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2237.1
Min RPKM: 98.2
Std RPKM: 463.3
Median RPKM: 686.6
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
2237.1
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
1951.7
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
1819.1
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
1729.7
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
1625.4
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
1600.3
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
1530.9
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
1505.7
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
1494.1
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
1493.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
1473.5
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
1447.3
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
1397.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
1352.1
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
1344.1
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
1271.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
1181.9
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
1149.5
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
1128.8
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
1111.5
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
1105.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
1090.0
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
1052.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
1001.3
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
974.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
955.0
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
936.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
935.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
928.2
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
893.9
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
863.7
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
862.7
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
862.0
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
836.7
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
825.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
804.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
787.6
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
771.5
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
753.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
733.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
727.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
724.6
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
724.1
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
688.0
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
685.2
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
680.9
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
677.6
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
676.5
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
671.9
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
669.7
GTEX-13113-1226-SM-5EGHT
60-69 years, female
654.5
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
650.5
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
635.6
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
627.0
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
623.7
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
616.4
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
611.0
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
610.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
595.9
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
592.1
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
581.5
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
532.9
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
528.5
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
510.7
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
490.5
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
489.4
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
437.3
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
432.8
GTEX-13111-1426-SM-5DUW3
50-59 years, male
425.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
348.9
GTEX-1192X-2526-SM-59868
50-59 years, male
338.8
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
331.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
330.9
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
321.8
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
303.5
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
300.6
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
269.6
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
267.7
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
249.9
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
242.1
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
225.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
206.3
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
196.8
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
168.0
GTEX-117YX-0326-SM-5GICL
50-59 years, male
160.0
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
126.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
121.1
GTEX-111YS-1426-SM-5GID8
60-69 years, male
98.2
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.