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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1042.9
Min RPKM: 0.6
Std RPKM: 223.2
Median RPKM: 197.2
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
1042.9
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
840.4
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
793.4
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
734.9
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
650.2
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
646.1
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
637.6
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
624.7
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
603.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
581.1
GTEX-ZTSS-0926-SM-59865
40-49 years, male
561.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
520.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
495.7
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
493.5
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
484.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
483.2
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
469.6
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
468.4
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
461.8
GTEX-13113-1226-SM-5EGHT
60-69 years, female
458.0
GTEX-1122O-1326-SM-5H11F
60-69 years, female
452.5
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
431.0
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
407.6
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
403.6
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
389.3
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
388.2
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
350.2
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
350.0
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
349.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
347.2
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
341.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
332.3
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
323.8
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
310.2
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
308.1
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
265.8
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
253.6
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
252.5
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
250.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
241.3
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
219.2
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
208.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
205.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
202.2
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
192.3
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
190.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
187.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
176.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
174.7
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
166.2
GTEX-111YS-1426-SM-5GID8
60-69 years, male
163.4
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
161.2
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
159.2
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
147.9
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
144.4
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
142.4
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
142.0
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
140.2
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
139.8
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
137.0
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
134.3
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
132.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
125.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
122.3
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
117.1
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
103.4
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
101.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
95.2
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
86.2
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
81.9
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
78.6
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
72.3
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
68.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
46.0
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
41.2
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
39.8
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
26.2
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
16.0
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
14.8
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
12.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
9.4
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
8.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
7.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
6.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
5.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
4.9
GTEX-1192X-2526-SM-59868
50-59 years, male
1.1
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
0.6
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.