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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1109.2
Min RPKM: 0.9
Std RPKM: 304.5
Median RPKM: 246.6
GTEX-ZTSS-0926-SM-59865
40-49 years, male
1109.2
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
1099.6
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
1043.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
1026.2
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
913.5
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
874.8
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
859.3
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
843.8
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
790.0
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
780.8
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
773.3
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
762.0
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
757.5
GTEX-111YS-1426-SM-5GID8
60-69 years, male
734.3
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
683.1
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
680.0
GTEX-1122O-1326-SM-5H11F
60-69 years, female
678.5
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
648.3
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
642.5
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
588.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
568.7
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
549.2
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
519.7
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
502.2
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
493.1
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
490.0
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
484.5
GTEX-13113-1226-SM-5EGHT
60-69 years, female
435.2
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
421.8
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
416.1
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
409.2
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
408.2
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
408.0
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
382.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
369.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
325.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
325.4
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
316.4
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
304.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
285.9
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
280.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
277.3
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
274.5
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
249.2
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
244.0
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
239.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
239.0
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
234.0
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
222.5
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
218.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
218.1
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
189.2
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
181.6
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
172.1
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
169.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
161.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
159.9
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
155.2
GTEX-13O61-1326-SM-5KM31
60-69 years, male
150.0
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
123.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
118.1
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
112.7
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
98.7
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
91.6
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
89.3
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
74.3
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
73.9
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
58.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
46.3
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
40.9
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
39.2
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
35.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
34.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
30.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
28.6
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
28.3
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
26.5
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
25.6
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
20.9
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
17.5
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
16.7
GTEX-117YX-0326-SM-5GICL
50-59 years, male
10.6
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
4.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
3.6
GTEX-13111-1426-SM-5DUW3
50-59 years, male
2.7
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
1.7
GTEX-1192X-2526-SM-59868
50-59 years, male
1.3
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
0.9
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.