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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 120.5
Min RPKM: 1.8
Std RPKM: 25.0
Median RPKM: 21.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
120.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
118.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
104.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
95.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
82.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
81.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
78.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
76.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
59.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
59.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
58.0
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
53.5
GTEX-12WSB-0011-R1b-SM-5P9EY
60-69 years, female
49.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
48.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
47.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
44.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
42.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
42.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
41.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
40.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
40.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
39.9
GTEX-N7MT-0011-R1a-SM-5SI7S
60-69 years, female
39.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
38.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
37.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
37.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
36.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
34.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
33.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
32.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
31.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
30.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
29.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
28.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
28.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
28.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
28.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
28.3
GTEX-XOTO-0011-R1B-SM-4B65C
50-59 years, male
27.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
27.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
25.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
25.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
23.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
23.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
22.2
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
21.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
21.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
21.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
21.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
20.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
20.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
19.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
18.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
18.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
17.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
17.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
17.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
16.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
15.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
14.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
13.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
13.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
13.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
13.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
12.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
12.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
12.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
12.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
12.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
11.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
11.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
10.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
10.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
10.6
GTEX-RNOR-0011-R1A-SM-5SI8F
50-59 years, female
10.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
9.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
9.3
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
8.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
8.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
8.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
8.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
8.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
7.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
7.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
5.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
5.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
5.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
4.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
4.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
3.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
2.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
2.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
1.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
1.8
Show all
HIPPOCAMPUS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.