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SCMH1
COLON - Expression summary
RNA expressioni
HPA:16.0TPM
GTEx:21.3RPKM
FANTOM5:21.2Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 16.0
overview Male, age 54 Sample 1
TPM: 13.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 12.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 9.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 10.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 8.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 25.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 21.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 14.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 24
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 16
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 17
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 19.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 15.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 21.3
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 28.8
Samples: 149

Max RPKM: 54.0
Min RPKM: 15.3
Std RPKM: 6.1
Median RPKM: 28.4
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 54.0
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 44.0
GTEX-12BJ1-2026-SM-5FQUH 60-69 years, male 44.0
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 42.7
GTEX-11DXZ-1626-SM-5GIDI 50-59 years, male 42.4
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 41.9
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 41.0
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 40.8
GTEX-13OW8-2726-SM-5L3FZ 60-69 years, male 40.3
GTEX-XUJ4-2126-SM-4BOOX 60-69 years, female 40.1
Show all
Colon - Transverse
RPKM: 15.5
Samples: 196

Max RPKM: 36.2
Min RPKM: 4.6
Std RPKM: 7.3
Median RPKM: 12.7
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 36.2
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 35.2
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 33.0
GTEX-Y114-1526-SM-4TT79 50-59 years, female 31.8
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 31.5
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 30.1
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 29.4
GTEX-117YX-0826-SM-5H11J 50-59 years, male 29.3
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 29.3
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 29.2
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 21.2
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 18.3
FF:10014-101C5 62,83,84 years, mixed 21.2

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.