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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 66.8
Min RPKM: 8.0
Std RPKM: 12.5
Median RPKM: 17.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
66.8
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
61.1
GTEX-117YX-0326-SM-5GICL
50-59 years, male
59.4
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
58.5
GTEX-1192X-2526-SM-59868
50-59 years, male
51.2
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
50.4
GTEX-13111-1426-SM-5DUW3
50-59 years, male
48.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
47.5
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
44.3
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
40.5
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
38.0
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
36.4
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
36.1
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
33.7
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
29.6
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
29.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
26.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
25.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
25.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
25.5
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
23.7
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
22.9
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
21.9
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
21.8
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
21.5
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
20.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
20.7
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
20.5
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
20.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
20.4
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
19.8
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
19.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
19.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
18.9
GTEX-1122O-1326-SM-5H11F
60-69 years, female
18.8
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
18.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
18.7
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
18.6
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
18.5
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
18.1
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
17.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
17.8
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
17.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
17.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
17.5
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
17.4
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
17.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
17.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
17.1
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
17.1
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
17.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
16.9
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
16.9
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
16.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
16.8
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
16.7
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
16.7
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
16.1
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
16.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
16.0
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
15.7
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
15.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
15.3
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
15.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
15.1
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
15.1
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
14.9
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
14.5
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
14.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
14.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
14.1
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
14.0
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
13.9
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
13.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
12.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
12.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
12.3
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
12.2
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
12.2
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
12.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
12.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
12.0
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
12.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
12.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
12.0
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
11.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
10.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
8.0
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.