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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 614.4
Min RPKM: 66.3
Std RPKM: 133.9
Median RPKM: 250.8
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
614.4
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
602.8
GTEX-111YS-1426-SM-5GID8
60-69 years, male
533.0
GTEX-1122O-1326-SM-5H11F
60-69 years, female
509.2
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
506.2
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
502.8
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
493.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
483.4
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
472.0
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
457.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
456.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
453.8
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
451.8
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
448.1
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
430.7
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
430.1
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
428.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
398.0
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
396.5
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
379.6
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
371.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
367.4
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
363.7
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
363.1
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
356.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
345.5
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
343.7
GTEX-13113-1226-SM-5EGHT
60-69 years, female
335.1
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
332.2
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
330.8
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
312.4
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
311.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
306.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
291.1
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
290.4
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
289.9
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
280.0
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
275.7
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
270.2
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
268.6
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
264.4
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
263.6
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
260.6
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
251.7
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
249.8
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
243.6
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
239.2
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
239.0
GTEX-13O61-1326-SM-5KM31
60-69 years, male
228.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
222.1
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
217.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
216.6
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
215.2
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
213.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
210.9
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
204.4
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
203.5
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
200.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
199.6
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
191.4
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
182.5
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
181.4
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
181.3
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
180.1
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
165.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
164.2
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
146.1
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
145.4
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
137.4
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
134.6
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
132.0
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
129.3
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
129.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
127.6
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
125.0
GTEX-1192X-2526-SM-59868
50-59 years, male
124.0
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
124.0
GTEX-117YX-0326-SM-5GICL
50-59 years, male
122.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
121.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
120.4
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
116.8
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
112.0
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
110.2
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
99.5
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
97.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
95.9
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
91.1
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
66.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.