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COLON - Expression summary
RNA expressioni
HPA:9.8TPM
GTEx:11.0RPKM
FANTOM5:27.6Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 9.8
overview Male, age 54 Sample 1
TPM: 11.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 10.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 8.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 6.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 10.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 9.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 10.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 11.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 10.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 11.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 11.0
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 13.6
Samples: 149

Max RPKM: 34.2
Min RPKM: 3.7
Std RPKM: 5.8
Median RPKM: 13.0
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 34.2
GTEX-X4EO-2726-SM-4E3HS 60-69 years, female 34.0
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 30.7
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 27.1
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 26.8
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 23.3
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 23.2
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 23.1
GTEX-11ZTS-1526-SM-5N9G7 60-69 years, female 22.6
GTEX-13N2G-2226-SM-5IJCU 60-69 years, male 22.5
Show all
Colon - Transverse
RPKM: 9.1
Samples: 196

Max RPKM: 54.4
Min RPKM: 2.5
Std RPKM: 5.9
Median RPKM: 7.3
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 54.4
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 37.8
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 29.5
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 28.1
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 26.7
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 23.5
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 23.0
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 19.5
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 18.6
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 18.4
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 27.6
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 26.4
FF:10014-101C5 62,83,84 years, mixed 27.6

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.