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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1045.8
Min RPKM: 144.7
Std RPKM: 161.7
Median RPKM: 313.3
GTEX-X3Y1-1926-SM-4PQZO
40-49 years, male
1045.8
GTEX-1314G-2026-SM-5LZUM
30-39 years, male
616.2
GTEX-1117F-3026-SM-5GZYU
60-69 years, female
608.9
GTEX-13OVI-2326-SM-5KM47
60-69 years, female
577.6
GTEX-13113-1526-SM-5EGHV
60-69 years, female
556.9
GTEX-WYVS-2026-SM-4RGNS
40-49 years, female
550.0
GTEX-13NYC-2626-SM-5K7VN
60-69 years, male
546.0
GTEX-1445S-2926-SM-5O993
60-69 years, male
541.5
GTEX-ZC5H-2726-SM-5KLZW
40-49 years, female
511.8
GTEX-ZA64-1726-SM-5CVMF
20-29 years, male
486.2
GTEX-ZXG5-2826-SM-5NQ8T
60-69 years, male
477.3
GTEX-XMK1-2626-SM-4B65R
40-49 years, male
468.4
GTEX-X15G-2126-SM-4PQZR
50-59 years, female
462.9
GTEX-XV7Q-2426-SM-4BRV8
40-49 years, female
450.3
GTEX-13111-2326-SM-5LZUQ
50-59 years, male
426.7
GTEX-11P81-2026-SM-5P9GT
30-39 years, female
408.1
GTEX-13G51-2426-SM-5LZY8
60-69 years, male
400.2
GTEX-Y5V6-2226-SM-4VDTC
60-69 years, male
393.6
GTEX-146FR-1226-SM-5SIA7
60-69 years, female
390.1
GTEX-13CF2-2426-SM-5LZYL
60-69 years, male
388.5
GTEX-13JVG-2926-SM-5J2N9
60-69 years, male
382.4
GTEX-11ZTS-3026-SM-5EQM7
60-69 years, female
382.0
GTEX-1339X-2326-SM-5HL5B
40-49 years, male
373.7
GTEX-ZQG8-2126-SM-4YCF1
60-69 years, female
370.5
GTEX-145ME-1626-SM-5RQI3
40-49 years, female
368.2
GTEX-13NYB-2426-SM-5IFF4
40-49 years, male
346.1
GTEX-11ZTT-2226-SM-5CVLP
60-69 years, female
318.3
GTEX-13O21-1926-SM-5MR39
50-59 years, male
316.8
GTEX-12WSL-2126-SM-5GCNG
50-59 years, male
313.3
GTEX-XGQ4-2626-SM-4AT6B
50-59 years, male
311.0
GTEX-12WSN-2226-SM-5DUXT
40-49 years, male
303.2
GTEX-11TUW-2426-SM-5EQKB
60-69 years, male
300.4
GTEX-131XF-2826-SM-5EGKH
60-69 years, male
281.8
GTEX-Y3I4-1926-SM-4TT8L
50-59 years, male
278.6
GTEX-WOFM-2126-SM-4OOSR
20-29 years, male
260.4
GTEX-YF7O-2226-SM-5CVN8
50-59 years, male
253.4
GTEX-111FC-2926-SM-5GZY7
60-69 years, male
251.0
GTEX-11NV4-1926-SM-5N9D4
60-69 years, male
244.5
GTEX-13QJC-2326-SM-5Q5CD
60-69 years, female
239.9
GTEX-11P82-0926-SM-5986X
20-29 years, male
237.8
GTEX-X5EB-1726-SM-4E3J7
40-49 years, male
220.4
GTEX-14B4R-1426-SM-5Q5CG
30-39 years, male
216.3
GTEX-WFJO-2026-SM-4LVM3
30-39 years, male
216.1
GTEX-ZQUD-2126-SM-51MSY
30-39 years, male
214.3
GTEX-Y111-2626-SM-4TT24
50-59 years, male
208.2
GTEX-11WQK-2926-SM-5EQKT
50-59 years, male
207.5
GTEX-YB5K-1726-SM-5IFIZ
40-49 years, female
201.7
GTEX-11EQ9-2026-SM-5P9JI
30-39 years, male
199.1
GTEX-ZPU1-2326-SM-57WEP
40-49 years, male
189.0
GTEX-ZP4G-1926-SM-57WDZ
20-29 years, female
179.8
GTEX-Y5LM-1826-SM-4VDT9
40-49 years, female
179.3
GTEX-X261-2426-SM-4PQZU
50-59 years, male
176.1
GTEX-ZT9W-2126-SM-51MSF
50-59 years, male
167.9
GTEX-13VXT-1726-SM-5IFF5
20-29 years, female
160.3
GTEX-ZE7O-2926-SM-51MSG
50-59 years, female
151.1
GTEX-13OVL-2926-SM-5IFG3
50-59 years, male
148.3
GTEX-12WSM-1826-SM-5BC64
60-69 years, male
144.7
Show all
SALIVARY GLAND - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.