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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1100.9
Min RPKM: 179.2
Std RPKM: 227.3
Median RPKM: 499.6
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
1100.9
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
1084.6
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
1070.7
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
1023.2
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
988.0
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
957.3
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
955.2
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
948.9
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
943.3
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
914.1
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
878.2
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
860.6
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
815.4
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
806.2
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
789.9
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
788.8
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
779.5
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
755.1
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
755.0
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
728.4
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
724.3
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
700.0
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
696.6
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
688.5
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
678.2
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
664.0
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
662.2
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
659.4
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
655.6
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
654.3
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
632.0
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
609.9
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
591.5
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
584.9
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
579.3
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
579.1
GTEX-QCQG-1226-SM-48U23
50-59 years, female
554.5
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
552.7
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
542.9
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
539.9
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
539.5
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
538.9
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
536.1
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
531.0
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
525.6
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
524.6
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
524.5
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
505.7
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
493.5
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
482.8
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
481.9
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
474.6
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
471.4
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
449.3
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
447.5
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
445.3
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
439.8
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
438.0
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
437.8
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
416.0
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
405.9
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
401.5
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
400.3
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
397.1
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
395.3
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
389.9
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
387.5
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
381.7
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
378.2
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
375.5
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
372.4
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
368.9
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
363.8
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
360.1
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
347.2
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
342.9
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
332.6
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
325.6
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
312.8
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
305.6
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
304.9
GTEX-S341-1226-SM-4AD5S
40-49 years, female
302.9
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
302.8
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
291.6
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
285.1
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
284.5
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
281.5
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
277.1
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
267.8
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
253.7
GTEX-11I78-2026-SM-5987C
50-59 years, female
250.0
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
243.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
243.2
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
240.0
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
238.1
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
179.2
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.