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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1096.4
Min RPKM: 234.0
Std RPKM: 179.2
Median RPKM: 593.7
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
1096.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
1096.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
1031.4
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
984.1
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
967.0
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
917.4
GTEX-1192X-2526-SM-59868
50-59 years, male
888.9
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
884.2
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
863.6
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
863.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
860.6
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
852.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
844.0
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
837.1
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
830.3
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
806.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
761.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
742.7
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
721.9
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
714.9
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
711.3
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
710.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
709.3
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
707.6
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
704.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
693.5
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
684.6
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
675.3
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
670.0
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
662.4
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
657.2
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
644.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
642.5
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
634.8
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
631.0
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
623.6
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
622.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
614.8
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
611.9
GTEX-111YS-1426-SM-5GID8
60-69 years, male
601.7
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
601.4
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
601.3
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
598.8
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
596.1
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
591.3
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
582.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
582.1
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
577.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
564.8
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
558.9
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
552.9
GTEX-13111-1426-SM-5DUW3
50-59 years, male
550.7
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
544.1
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
540.9
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
538.6
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
537.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
533.3
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
525.5
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
523.3
GTEX-13113-1226-SM-5EGHT
60-69 years, female
518.5
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
515.6
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
513.5
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
511.7
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
491.0
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
490.2
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
485.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
479.6
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
479.3
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
476.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
465.8
GTEX-1122O-1326-SM-5H11F
60-69 years, female
462.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
454.2
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
441.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
437.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
435.2
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
435.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
429.9
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
429.8
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
428.9
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
416.0
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
396.0
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
386.6
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
379.4
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
369.9
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
360.7
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
358.1
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
298.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
234.0
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.