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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 913.9
Min RPKM: 0.0
Std RPKM: 220.8
Median RPKM: 96.6
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
913.9
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
790.9
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
776.8
GTEX-1122O-1326-SM-5H11F
60-69 years, female
754.6
GTEX-111YS-1426-SM-5GID8
60-69 years, male
737.4
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
708.1
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
627.0
GTEX-ZTSS-0926-SM-59865
40-49 years, male
581.8
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
518.3
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
501.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
449.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
437.2
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
422.6
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
404.6
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
377.4
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
368.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
351.2
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
318.5
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
317.1
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
311.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
302.6
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
290.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
280.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
280.2
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
260.5
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
259.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
255.2
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
254.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
241.1
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
224.4
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
208.5
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
185.7
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
182.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
165.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
164.6
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
144.2
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
139.8
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
139.7
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
135.5
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
126.0
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
123.9
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
114.4
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
109.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
99.8
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
93.4
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
89.6
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
78.7
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
78.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
73.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
71.1
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
70.2
GTEX-13O61-1326-SM-5KM31
60-69 years, male
63.9
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
63.9
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
62.5
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
59.8
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
53.7
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
44.8
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
43.8
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
43.4
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
38.3
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
35.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
34.5
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
31.2
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
28.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
26.6
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
20.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
17.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
14.8
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
14.4
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
13.6
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
13.6
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
10.0
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
7.7
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
7.4
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
7.4
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
6.1
GTEX-117YX-0326-SM-5GICL
50-59 years, male
5.0
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
4.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
3.5
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
1.9
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
1.5
GTEX-1192X-2526-SM-59868
50-59 years, male
1.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
1.2
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
0.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
0.6
GTEX-13111-1426-SM-5DUW3
50-59 years, male
0.1
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
0.1
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
0.0
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.