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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 456.9
Min RPKM: 7.4
Std RPKM: 104.4
Median RPKM: 106.5
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
456.9
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
454.0
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
446.6
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
351.0
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
346.9
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
321.4
GTEX-S341-1226-SM-4AD5S
40-49 years, female
310.9
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
305.5
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
304.9
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
294.2
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
280.5
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
272.8
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
268.7
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
253.1
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
249.1
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
238.7
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
226.7
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
223.4
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
214.3
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
206.2
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
201.9
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
190.7
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
185.6
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
183.4
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
178.1
GTEX-11I78-2026-SM-5987C
50-59 years, female
177.5
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
169.4
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
164.4
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
163.8
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
160.0
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
158.6
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
157.4
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
149.1
GTEX-QCQG-1226-SM-48U23
50-59 years, female
147.3
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
146.0
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
143.1
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
142.9
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
140.6
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
140.0
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
137.5
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
134.1
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
125.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
121.5
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
121.0
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
112.4
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
111.6
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
110.0
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
109.4
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
103.6
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
103.5
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
99.2
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
98.6
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
94.4
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
94.1
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
92.0
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
91.2
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
88.0
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
72.9
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
67.7
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
67.7
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
67.6
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
65.6
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
64.8
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
60.6
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
60.3
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
58.7
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
55.2
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
54.9
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
53.1
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
50.7
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
50.0
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
49.6
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
44.8
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
44.0
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
43.8
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
42.3
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
40.7
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
40.6
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
40.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
39.9
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
39.7
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
37.3
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
36.3
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
34.0
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
33.9
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
33.0
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
31.5
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
27.8
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
26.1
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
25.4
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
24.2
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
17.9
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
17.5
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
16.0
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
14.8
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
7.4
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.