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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1268.2
Min RPKM: 386.1
Std RPKM: 159.2
Median RPKM: 666.5
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
1268.2
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
1228.5
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
1121.0
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
1077.5
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
1039.6
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
962.5
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
938.1
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
937.2
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
875.2
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
852.2
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
842.6
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
834.3
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
820.8
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
818.6
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
814.1
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
811.8
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
810.9
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
810.2
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
792.1
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
785.8
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
783.2
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
781.7
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
777.6
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
757.6
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
757.2
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
754.5
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
751.1
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
746.2
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
743.7
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
736.5
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
730.8
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
729.0
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
726.1
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
725.3
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
716.3
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
706.6
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
699.4
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
693.2
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
690.4
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
686.8
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
684.5
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
681.5
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
680.4
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
678.1
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
675.5
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
674.5
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
672.9
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
668.7
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
664.4
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
656.7
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
654.3
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
648.6
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
647.3
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
645.7
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
642.2
GTEX-11I78-2026-SM-5987C
50-59 years, female
641.6
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
636.7
GTEX-QCQG-1226-SM-48U23
50-59 years, female
635.7
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
635.4
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
631.5
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
630.2
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
621.1
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
614.4
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
610.0
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
606.1
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
602.8
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
595.7
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
595.6
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
593.5
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
592.2
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
590.5
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
585.3
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
583.0
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
579.6
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
575.3
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
575.0
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
571.2
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
568.3
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
568.0
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
562.1
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
558.2
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
550.1
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
537.8
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
536.3
GTEX-S341-1226-SM-4AD5S
40-49 years, female
533.4
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
513.5
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
507.0
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
502.2
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
486.8
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
486.6
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
479.9
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
470.8
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
470.6
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
455.9
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
417.4
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
386.1
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.