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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1081.4
Min RPKM: 150.1
Std RPKM: 163.5
Median RPKM: 457.5
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
1081.4
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
834.6
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
821.5
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
783.0
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
763.6
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
746.5
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
710.0
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
706.4
GTEX-1192X-2526-SM-59868
50-59 years, male
704.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
681.0
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
677.0
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
676.9
GTEX-13O61-1326-SM-5KM31
60-69 years, male
660.1
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
631.3
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
627.4
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
624.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
621.0
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
600.2
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
594.9
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
574.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
564.5
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
561.6
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
561.1
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
558.3
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
555.5
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
554.3
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
550.6
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
548.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
519.4
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
514.3
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
514.0
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
510.4
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
499.5
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
498.3
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
497.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
496.8
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
495.2
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
490.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
487.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
475.6
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
467.5
GTEX-13113-1226-SM-5EGHT
60-69 years, female
464.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
461.3
GTEX-117YX-0326-SM-5GICL
50-59 years, male
457.8
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
457.1
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
442.7
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
442.1
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
434.9
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
426.2
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
423.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
422.8
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
419.9
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
418.8
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
418.0
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
416.4
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
415.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
409.0
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
404.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
398.4
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
392.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
387.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
381.2
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
379.5
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
370.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
370.6
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
370.4
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
368.1
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
365.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
348.6
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
344.8
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
335.3
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
316.3
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
315.4
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
315.0
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
313.9
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
306.2
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
304.9
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
303.5
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
301.5
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
298.0
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
278.3
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
244.0
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
227.2
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
225.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
225.1
GTEX-1122O-1326-SM-5H11F
60-69 years, female
201.6
GTEX-ZTSS-0926-SM-59865
40-49 years, male
199.9
GTEX-111YS-1426-SM-5GID8
60-69 years, male
150.1
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.