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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 148.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 240.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 112.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 206.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 170.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 129.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 162.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 135.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 254.0
Min RPKM: 23.3
Std RPKM: 36.5
Median RPKM: 82.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
254.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
224.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
219.7
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
164.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
145.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
144.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
139.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
132.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
131.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
128.9
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
128.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
127.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
127.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
127.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
126.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
124.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
119.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
118.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
117.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
115.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
115.0
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
113.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
112.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
109.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
109.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
108.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
108.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
105.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
103.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
103.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
101.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
99.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
99.5
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
98.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
97.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
97.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
97.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
95.7
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
95.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
95.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
94.7
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
93.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
92.8
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
92.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
92.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
91.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
90.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
89.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
89.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
88.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
87.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
87.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
87.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
86.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
86.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
84.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
83.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
83.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
83.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
82.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
81.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
81.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
79.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
79.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
78.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
78.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
77.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
77.4
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
77.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
76.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
76.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
75.9
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
75.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
75.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
74.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
74.3
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
74.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
74.0
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
73.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
71.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
71.1
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
70.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
69.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
69.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
67.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
67.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
67.1
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
67.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
66.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
64.9
GTEX-QEL4-1226-SM-447A4
50-59 years, male
63.9
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
63.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
63.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
63.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
60.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
60.3
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
58.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
58.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
55.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
53.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
53.5
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
52.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
51.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
51.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
48.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
47.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
47.4
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
45.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
45.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
42.7
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
40.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
40.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
40.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
39.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
37.0
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
30.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
29.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
28.0
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
23.3
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.