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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 171.0
Min RPKM: 11.2
Std RPKM: 37.8
Median RPKM: 84.8
GTEX-111YS-1426-SM-5GID8
60-69 years, male
171.0
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
154.6
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
143.9
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
140.1
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
136.2
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
136.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
135.1
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
134.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
133.7
GTEX-1122O-1326-SM-5H11F
60-69 years, female
133.4
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
133.3
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
127.4
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
126.9
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
123.1
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
122.7
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
121.4
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
121.1
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
120.7
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
119.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
114.9
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
114.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
113.6
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
111.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
110.5
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
107.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
107.2
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
105.3
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
100.6
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
100.2
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
99.1
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
99.0
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
97.8
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
97.6
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
96.9
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
94.7
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
93.2
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
90.4
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
90.0
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
87.7
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
87.4
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
87.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
86.3
GTEX-13113-1226-SM-5EGHT
60-69 years, female
86.1
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
84.9
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
84.8
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
83.7
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
83.6
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
82.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
80.4
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
79.2
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
78.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
75.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
75.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
73.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
73.0
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
71.8
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
70.7
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
70.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
70.0
GTEX-13O61-1326-SM-5KM31
60-69 years, male
69.3
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
65.4
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
64.9
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
64.1
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
57.9
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
54.4
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
53.2
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
53.1
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
52.6
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
52.4
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
52.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
51.1
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
50.1
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
49.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
46.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
41.5
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
36.2
GTEX-13111-1426-SM-5DUW3
50-59 years, male
28.9
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
27.6
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
23.0
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
21.3
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
19.8
GTEX-1192X-2526-SM-59868
50-59 years, male
18.6
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
17.8
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
17.7
GTEX-117YX-0326-SM-5GICL
50-59 years, male
16.6
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
13.6
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
12.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
11.2
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.