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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 559
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 563.2
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 800.3
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 511.7
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 499.7
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 571.6
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 1170.7
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 796.3
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 1071.3
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 283.4
Min RPKM: 83.4
Std RPKM: 24.0
Median RPKM: 121.8
GTEX-12WSM-1326-SM-5GCP9
60-69 years, male
283.4
GTEX-P4QR-0226-SM-3NMCH
60-69 years, male
218.3
GTEX-ZAB4-0126-SM-5CVMG
40-49 years, male
198.0
GTEX-145LT-0426-SM-5LUAP
40-49 years, male
189.5
GTEX-1399R-1626-SM-5P9GG
30-39 years, male
180.7
GTEX-147F4-0626-SM-5LUAK
50-59 years, male
175.4
GTEX-13OW6-0126-SM-5IJGM
50-59 years, male
164.9
GTEX-14A6H-2326-SM-5Q5B5
30-39 years, male
159.5
GTEX-11ONC-2226-SM-5HL6D
60-69 years, male
158.8
GTEX-YJ89-0626-SM-4TT3Z
60-69 years, male
156.8
GTEX-ZQUD-2026-SM-51MSM
30-39 years, male
154.0
GTEX-X261-2326-SM-4PQYU
50-59 years, male
153.2
GTEX-13N2G-0126-SM-5N9DV
60-69 years, male
152.9
GTEX-PW2O-1426-SM-48TCD
20-29 years, male
151.9
GTEX-NFK9-0126-SM-3LK5H
40-49 years, male
151.7
GTEX-YEC4-1526-SM-4W1YU
40-49 years, male
148.9
GTEX-U8T8-1126-SM-4DXUE
60-69 years, male
147.2
GTEX-X3Y1-2626-SM-4PQZI
40-49 years, male
147.1
GTEX-12WSH-0326-SM-5GCNH
50-59 years, male
146.8
GTEX-S7SE-0326-SM-4AT5Q
50-59 years, male
145.9
GTEX-Z93S-1726-SM-5HL8G
50-59 years, male
145.5
GTEX-139TT-2226-SM-5LZWO
60-69 years, male
144.7
GTEX-Y9LG-1726-SM-4VBQE
30-39 years, male
143.5
GTEX-SUCS-1326-SM-4DM5T
70-79 years, male
143.0
GTEX-144GL-0726-SM-5LU4P
50-59 years, male
141.9
GTEX-11WQK-2826-SM-5EQKH
50-59 years, male
141.6
GTEX-ZYFC-0126-SM-5GIEH
50-59 years, male
141.5
GTEX-14753-0626-SM-5Q5CY
60-69 years, male
140.7
GTEX-1339X-1926-SM-5PNVP
40-49 years, male
140.6
GTEX-12WSL-2326-SM-5DUXQ
50-59 years, male
139.0
GTEX-T5JC-0726-SM-4DM55
20-29 years, male
138.7
GTEX-RN64-2326-SM-48FDW
50-59 years, male
138.4
GTEX-1399Q-2826-SM-5IJEZ
40-49 years, male
138.3
GTEX-Q2AH-1526-SM-48TZG
40-49 years, male
138.1
GTEX-R55C-1426-SM-48FED
40-49 years, male
137.3
GTEX-11GS4-2026-SM-5N9CP
60-69 years, male
136.7
GTEX-14ABY-0626-SM-5Q5C9
50-59 years, male
136.6
GTEX-13NYB-2226-SM-5MR58
40-49 years, male
136.1
GTEX-OIZI-0126-SM-3NB13
40-49 years, male
136.0
GTEX-VJYA-1426-SM-4KL1Y
60-69 years, male
135.9
GTEX-13OVH-0726-SM-5N9BU
70-79 years, male
135.6
GTEX-144GN-1626-SM-5Q5BU
50-59 years, male
135.6
GTEX-QEG5-0126-SM-4R1JR
20-29 years, male
135.5
GTEX-11O72-0726-SM-5P9GO
40-49 years, male
134.0
GTEX-YF7O-2026-SM-4W1YE
50-59 years, male
132.8
GTEX-S3XE-1526-SM-4AD5A
50-59 years, male
132.2
GTEX-12WSI-2126-SM-5GCMV
50-59 years, male
131.9
GTEX-YFCO-1726-SM-4W21S
40-49 years, male
131.8
GTEX-111VG-1926-SM-5GIDO
60-69 years, male
131.0
GTEX-13OVL-0426-SM-5IFG6
50-59 years, male
130.7
GTEX-13111-1526-SM-5EGJX
50-59 years, male
130.0
GTEX-13112-0226-SM-5P9IV
50-59 years, male
129.8
GTEX-139TS-1726-SM-5IJG5
60-69 years, male
129.7
GTEX-11EI6-2226-SM-5EGJM
60-69 years, male
129.2
GTEX-QV44-1726-SM-4R1KG
50-59 years, male
128.8
GTEX-145MO-0126-SM-5S2QU
60-69 years, male
128.7
GTEX-13N1W-2626-SM-5IJEP
70-79 years, male
128.3
GTEX-12ZZY-0126-SM-5LZV2
60-69 years, male
128.2
GTEX-ZAB5-2426-SM-5CVMW
50-59 years, male
128.2
GTEX-1212Z-0326-SM-5FQSJ
60-69 years, male
127.8
GTEX-117XS-2026-SM-5GID1
60-69 years, male
127.6
GTEX-QMRM-1526-SM-4R1K6
50-59 years, male
127.6
GTEX-RUSQ-2126-SM-47JXK
50-59 years, male
127.5
GTEX-11NSD-1026-SM-5N9BE
20-29 years, male
127.1
GTEX-11NUK-2626-SM-5A5MB
50-59 years, male
126.7
GTEX-PLZ5-1526-SM-3P5ZX
50-59 years, male
126.3
GTEX-13VXU-0726-SM-5J2O7
50-59 years, male
126.0
GTEX-ZVZP-2226-SM-57WBF
50-59 years, male
125.8
GTEX-147JS-0126-SM-5S2TW
60-69 years, male
125.7
GTEX-P4QS-2126-SM-3NMCF
60-69 years, male
125.6
GTEX-S95S-1126-SM-4B64E
60-69 years, male
125.5
GTEX-ZA64-1626-SM-5CVME
20-29 years, male
125.4
GTEX-N7MS-0126-SM-3TW8O
60-69 years, male
125.0
GTEX-OOBJ-2126-SM-3NB1N
60-69 years, male
124.3
GTEX-145MH-2326-SM-5O9AW
50-59 years, male
123.9
GTEX-ZV7C-2026-SM-5NQ8F
50-59 years, male
123.4
GTEX-OIZH-2126-SM-3NB1P
50-59 years, male
123.2
GTEX-131XE-0426-SM-5IJF4
50-59 years, male
122.8
GTEX-TKQ1-0926-SM-4DXU2
30-39 years, male
122.7
GTEX-XMK1-2026-SM-4B65K
40-49 years, male
122.3
GTEX-11WQC-2326-SM-5EQKE
60-69 years, male
122.2
GTEX-13OW5-2526-SM-5L3I1
60-69 years, male
122.1
GTEX-ZYT6-2726-SM-5GICP
30-39 years, male
122.1
GTEX-11EQ8-1426-SM-5EGJR
60-69 years, male
121.9
GTEX-T6MN-2026-SM-4DM7L
50-59 years, male
121.9
GTEX-11OF3-1826-SM-5987N
60-69 years, male
121.8
GTEX-13NZB-2026-SM-5MR4M
30-39 years, male
121.8
GTEX-XGQ4-2026-SM-4AT6G
50-59 years, male
121.7
GTEX-Y8E4-2226-SM-5LU94
40-49 years, male
121.7
GTEX-11P7K-1026-SM-5HL6Y
30-39 years, male
121.6
GTEX-XLM4-1526-SM-4AT6D
60-69 years, male
121.1
GTEX-XBED-2026-SM-4AT5D
60-69 years, male
120.7
GTEX-RWSA-2426-SM-47JXR
40-49 years, male
120.6
GTEX-QLQ7-1426-SM-4R1JX
60-69 years, male
119.9
GTEX-ZT9X-1426-SM-5DUX1
40-49 years, male
119.9
GTEX-13FLW-2126-SM-5N9FD
50-59 years, male
119.7
GTEX-WH7G-1926-SM-4LVMM
40-49 years, male
119.7
GTEX-139T6-1226-SM-5IFFC
50-59 years, male
119.3
GTEX-11DXZ-2126-SM-59881
50-59 years, male
119.2
GTEX-U3ZH-1526-SM-4DXV1
30-39 years, male
119.2
GTEX-WFG8-1926-SM-4LVM1
20-29 years, male
118.8
GTEX-T8EM-0126-SM-4DM5R
40-49 years, male
118.1
GTEX-S33H-0126-SM-4AD62
30-39 years, male
117.4
GTEX-ZDTT-2026-SM-5K7TY
60-69 years, male
117.4
GTEX-WVLH-2626-SM-4MVNV
50-59 years, male
117.1
GTEX-REY6-0126-SM-48FDT
60-69 years, male
116.4
GTEX-117YW-1526-SM-5EGGP
50-59 years, male
116.1
GTEX-12696-0226-SM-5EGL3
60-69 years, male
115.6
GTEX-V955-1926-SM-4KL1L
60-69 years, male
115.0
GTEX-XBEC-0126-SM-4GIDT
50-59 years, male
114.7
GTEX-U3ZM-1626-SM-4DXSK
40-49 years, male
114.6
GTEX-13O61-2026-SM-5J2M6
60-69 years, male
114.1
GTEX-ZTX8-1126-SM-51MRM
20-29 years, male
114.1
GTEX-S7PM-0626-SM-4AD4Q
60-69 years, male
114.0
GTEX-V1D1-2126-SM-4JBH4
50-59 years, male
113.6
GTEX-XQ3S-2726-SM-4BOP2
20-29 years, male
113.5
GTEX-QV31-1126-SM-4R1K4
30-39 years, male
113.3
GTEX-R55E-0726-SM-48FCZ
20-29 years, male
113.3
GTEX-12C56-1426-SM-5FQSW
20-29 years, male
112.8
GTEX-ZUA1-2726-SM-59HLJ
40-49 years, male
110.6
GTEX-SNOS-1126-SM-4DM67
40-49 years, male
110.4
GTEX-RM2N-1326-SM-48FCW
50-59 years, male
110.3
GTEX-13O1R-0726-SM-5IJEI
60-69 years, male
110.1
GTEX-SNMC-1026-SM-4DM7K
20-29 years, male
110.1
GTEX-111FC-1926-SM-5GZYC
60-69 years, male
109.6
GTEX-U4B1-1526-SM-4DXSL
40-49 years, male
109.6
GTEX-TKQ2-1526-SM-4DXUN
50-59 years, male
108.9
GTEX-ZZ64-1126-SM-5GZXY
20-29 years, male
108.6
GTEX-YB5E-1926-SM-5IFIG
40-49 years, male
107.9
GTEX-11EQ9-1926-SM-5PNVV
30-39 years, male
107.4
GTEX-11TUW-2226-SM-5EQL9
60-69 years, male
107.3
GTEX-11NV4-1726-SM-5N9FC
60-69 years, male
107.2
GTEX-WK11-0326-SM-4OOS6
50-59 years, male
107.1
GTEX-111CU-1726-SM-5EGHM
50-59 years, male
105.8
GTEX-ZDYS-1326-SM-5IJFF
50-59 years, male
105.8
GTEX-13NZA-2526-SM-5IJFX
60-69 years, male
105.5
GTEX-132QS-1226-SM-5P9GD
60-69 years, male
104.2
GTEX-O5YT-2126-SM-3MJGD
20-29 years, male
103.8
GTEX-11P82-1526-SM-5BC5M
20-29 years, male
103.7
GTEX-ZTSS-1526-SM-51MTC
40-49 years, male
103.7
GTEX-WOFM-1126-SM-4OOSB
20-29 years, male
103.5
GTEX-QLQW-1026-SM-447A9
30-39 years, male
103.4
GTEX-ZT9W-2226-SM-57WFU
50-59 years, male
103.4
GTEX-XPVG-2226-SM-4B65U
50-59 years, male
103.3
GTEX-Y5V6-1726-SM-4VDSZ
60-69 years, male
103.2
GTEX-13FTW-1326-SM-5LZZD
40-49 years, male
103.1
GTEX-11ZUS-2726-SM-5FQUA
30-39 years, male
102.8
GTEX-WFON-2026-SM-4LVMW
40-49 years, male
102.7
GTEX-ZVTK-0126-SM-57WDG
20-29 years, male
101.1
GTEX-XPT6-1626-SM-4B655
20-29 years, male
100.7
GTEX-WHSB-2126-SM-4M1XF
50-59 years, male
100.3
GTEX-ZPU1-2126-SM-57WED
40-49 years, male
100.2
GTEX-144GM-0426-SM-5Q5C8
20-29 years, male
100.0
GTEX-13O21-1226-SM-5J2MK
50-59 years, male
99.7
GTEX-Q2AI-1226-SM-48U14
40-49 years, male
99.7
GTEX-UPJH-0126-SM-4IHLL
50-59 years, male
99.3
GTEX-OXRL-2126-SM-3NM98
50-59 years, male
98.4
GTEX-QEG4-0126-SM-48TZE
30-39 years, male
98.2
GTEX-XAJ8-1326-SM-47JYT
40-49 years, male
97.3
GTEX-11TT1-2226-SM-5GU6B
20-29 years, male
96.9
GTEX-Y111-2426-SM-4TT23
50-59 years, male
96.5
GTEX-111YS-2026-SM-5EGGL
60-69 years, male
96.3
GTEX-YEC3-1726-SM-5IFIK
50-59 years, male
95.3
GTEX-S4Q7-1226-SM-4AD5I
20-29 years, male
95.2
GTEX-R55D-0126-SM-48FEL
50-59 years, male
93.9
GTEX-11LCK-2326-SM-5HL53
30-39 years, male
93.5
GTEX-X5EB-2026-SM-4E3KA
40-49 years, male
91.9
GTEX-OOBK-2126-SM-3LK5T
40-49 years, male
91.2
GTEX-U8XE-0126-SM-4E3I3
30-39 years, male
87.6
GTEX-WZTO-0326-SM-4PQYZ
40-49 years, male
84.9
GTEX-OHPM-2126-SM-3LK75
50-59 years, male
84.6
GTEX-13FHP-2826-SM-5IJFW
50-59 years, male
83.4
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.