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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 390.3
Min RPKM: 63.3
Std RPKM: 65.1
Median RPKM: 149.7
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
390.3
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
353.3
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
293.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
287.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
286.7
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
275.5
GTEX-13O61-1326-SM-5KM31
60-69 years, male
265.6
GTEX-1192X-2526-SM-59868
50-59 years, male
261.8
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
247.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
244.5
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
243.3
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
242.7
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
238.5
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
230.7
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
229.0
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
226.4
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
222.5
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
220.7
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
219.4
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
216.5
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
212.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
201.8
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
196.3
GTEX-117YX-0326-SM-5GICL
50-59 years, male
192.7
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
192.4
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
191.0
GTEX-13111-1426-SM-5DUW3
50-59 years, male
186.6
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
186.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
182.0
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
178.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
173.1
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
172.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
170.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
168.2
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
166.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
165.4
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
164.8
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
164.4
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
162.2
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
159.3
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
158.2
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
156.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
154.8
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
150.5
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
148.8
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
144.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
143.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
140.8
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
140.2
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
137.1
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
135.3
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
134.6
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
132.0
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
130.6
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
130.5
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
129.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
125.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
124.3
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
123.4
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
121.4
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
120.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
116.5
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
115.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
113.4
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
112.9
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
112.2
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
111.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
109.9
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
108.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
107.3
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
107.0
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
105.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
104.8
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
104.7
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
104.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
95.6
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
95.6
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
93.5
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
93.1
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
92.5
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
90.5
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
89.4
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
88.5
GTEX-1122O-1326-SM-5H11F
60-69 years, female
86.1
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
76.5
GTEX-111YS-1426-SM-5GID8
60-69 years, male
73.4
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
66.8
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
63.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.