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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2487.8
Min RPKM: 140.0
Std RPKM: 538.3
Median RPKM: 816.2
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
2487.8
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
2165.4
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
2104.0
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
1906.3
GTEX-S341-1226-SM-4AD5S
40-49 years, female
1636.4
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
1635.0
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
1634.7
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
1608.9
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
1602.5
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
1588.0
GTEX-11I78-2026-SM-5987C
50-59 years, female
1534.4
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
1514.4
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
1441.1
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
1367.6
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
1352.0
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
1347.5
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
1292.1
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
1286.8
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
1279.7
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
1273.3
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
1231.2
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
1216.1
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
1214.0
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
1190.0
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
1180.7
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
1177.3
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
1136.0
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
1135.0
GTEX-QCQG-1226-SM-48U23
50-59 years, female
1123.1
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
1109.7
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
1101.6
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
1097.2
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
1087.5
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
1069.4
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
1065.6
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
1062.5
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
1055.3
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
1027.6
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
1024.3
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
995.8
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
987.2
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
980.1
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
966.6
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
936.3
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
912.9
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
895.6
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
837.7
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
817.1
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
815.3
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
809.7
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
726.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
705.6
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
700.8
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
669.3
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
668.9
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
661.7
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
635.7
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
617.5
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
552.4
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
540.6
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
539.5
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
514.1
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
499.7
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
492.8
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
464.0
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
441.4
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
424.4
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
418.6
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
414.3
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
356.2
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
352.1
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
306.3
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
266.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
259.5
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
251.3
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
233.1
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
221.6
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
211.8
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
210.9
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
204.1
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
200.5
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
199.1
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
197.1
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
194.4
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
194.2
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
189.2
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
184.5
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
184.4
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
174.0
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
173.3
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
170.4
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
165.6
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
161.5
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
146.8
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
146.3
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
140.0
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.